Transcript: LINC01305:3

Basic information

LNCipedia transcript ID: LINC01305:3 
HGNC Gene Symbol: LINC01305    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1305
Ensembl Gene ID: ENSG00000231453
Ensembl Transcript ID: ENST00000436820
Location (hg19): chr2:175193500-175195270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1635 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436820; TCONS_00003052; ENST00000436820.1; AC018470.4-002; OTTHUMT00000334114.1; NONHSAT075556
Alternative gene names: ENSG00000231453; XLOC_001759; linc-SP9-1; AC018470.4; ENSG00000231453.1; OTTHUMG00000154148.1; LINC01305;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.2581 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01305:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SP9-1:2
3.1 lnc-SP9-1:2
4.0 LINC01305:3
4.1 LINC01305:3
5.0 LINC01305:3
5.1 LINC01305:3
5.2 LINC01305:3