Transcript: LINC01307:4

Basic information

LNCipedia transcript ID: LINC01307:4 
HGNC Gene Symbol: LINC01307    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1307
Ensembl Gene ID: ENSG00000231671
Ensembl Transcript ID: ENST00000439146
RefSeq ID: NR_126402
Location (hg19): chr1:101789393-101842869
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 474 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000262; ENST00000439146; ENST00000439146.1; RP11-157N3.1-002; OTTHUMT00000029906.1; NONHSAT004857; NR_126402; NR_126402.1
Alternative gene names: XLOC_000319; linc-RNPC3-7; ENSG00000231671; RP11-157N3.1; ENSG00000231671.1; OTTHUMG00000010834.1; LINC01307


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0467 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01307:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-S1PR1-2:2
3.1 lnc-S1PR1-3:2
4.0 LINC01307:4
4.1 LINC01307:4
5.0 LINC01307:4
5.1 LINC01307:4
5.2 LINC01307:4