Transcript: LINC01338:1

Basic information

LNCipedia transcript ID: LINC01338:1 
LNCipedia gene ID: LINC01338
Location (hg19): chr5:82146852-82155888
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00010392
Alternative gene names: XLOC_004908; linc-RPS23-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.5579 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01338:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM167A-4:1
3.1 lnc-TMEM167A-4:1
4.0 LINC01338:1
4.1 LINC01338:1
5.0 LINC01338:1
5.1 LINC01338:1
5.2 LINC01338:1