Transcript: LINC01358:5

Basic information

LNCipedia transcript ID: LINC01358:5 
HGNC Gene Symbol: LINC01358    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1358
Ensembl Gene ID: ENSG00000237352
Ensembl Transcript ID: ENST00000438195
Location (hg19): chr1:59486260-59510286
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 306 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438195; ENST00000438195.1; RP4-794H19.4-001; OTTHUMT00000023038.2; NONHSAT003544; ENST00000438195.5
Alternative gene names: ENSG00000230812; RP4-794H19.4; ENSG00000230812.1; OTTHUMG00000008373.2; ENSG00000237352.3; LINC01358;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.6422 non-coding 
CPAT coding probability 22.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01358:5 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-4:2
3.1 lnc-FGGY-4:2
4.0 LINC01358:5
4.1 LINC01358:5
5.0 LINC01358:5
5.1 LINC01358:5
5.2 LINC01358:5