Transcript: LINC01370:5

Basic information

LNCipedia transcript ID: LINC01370:5 
LNCipedia gene ID: LINC01370
RefSeq ID: NR_109936
Location (hg19): chr20:38633103-38637171
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 838 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109936; NR_109936.1
Alternative gene names: HI-LNC25; LINC01370


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.9446 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01370:5 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHX35-2:7
4.0 LINC01370:5
4.1 LINC01370:5
5.0 LINC01370:5
5.1 LINC01370:5
5.2 LINC01370:5