Transcript: LINC01376:6

Basic information

LNCipedia transcript ID: LINC01376:6 
HGNC Gene Symbol: LINC01376    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1376
Ensembl Gene ID: ENSG00000236204
Ensembl Transcript ID: ENST00000424895
RefSeq ID: NR_135287
Location (hg19): chr2:19167729-19226726
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1949 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000424895; ENST00000424895.1; AC092594.1-001; OTTHUMT00000323831.1; NONHSAT069380; NR_135287.1
Alternative gene names: ENSG00000236204; AC092594.1; ENSG00000236204.1; OTTHUMG00000151766.2; ENSG00000236204.5; LINC01376;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.2406 non-coding 
CPAT coding probability 6.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01376:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OSR1-3:4
3.1 lnc-OSR1-3:4
4.0 LINC01376:6
4.1 LINC01376:6
5.0 LINC01376:6
5.1 LINC01376:6
5.2 LINC01376:6