Transcript: LINC01384:2

Basic information

LNCipedia transcript ID: LINC01384:2 
LNCipedia gene ID: LINC01384
Location (hg19): chr20:22569446-22588609
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028337; NONHSAT078999
Alternative gene names: XLOC_013685; linc-FOXA2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.5196 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01384:2 no no no no

Available literature

  1. Liang (2018), LncRNA-NEF antagonized epithelial to mesenchymal transition and cancer metastasis via cis-regulating FOXA2 and inactivating Wnt/β-catenin signaling., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-2:2
3.1 lnc-FOXA2-1:2
4.0 LINC01384:2
4.1 LINC01384:2
5.0 LINC01384:2
5.1 LINC01384:2
5.2 LINC01384:2