Transcript: LINC01385:1

Basic information

LNCipedia transcript ID: LINC01385:1 
HGNC Gene Symbol: LINC01385    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1385
Ensembl Gene ID: ENSG00000251604
Ensembl Transcript ID: ENST00000512310
Location (hg19): chr5:72747323-72749220
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 780 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009424; ENST00000512310; ENST00000512310.1; RP11-79P5.7-001; OTTHUMT00000369149.1; NONHSAT102123
Alternative gene names: XLOC_004427; linc-BTF3-1; ENSG00000251604; RP11-79P5.7; ENSG00000251604.1; OTTHUMG00000162491.1; LINC01385; TCONS_00009424


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7038 non-coding 
CPAT coding probability 6.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01385:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTF3-1:1
3.1 lnc-BTF3-1:1
4.0 LINC01385:1
4.1 LINC01385:1
5.0 LINC01385:1
5.1 LINC01385:1
5.2 LINC01385:1