Transcript: LINC01388:11

Basic information

LNCipedia transcript ID: LINC01388:11 
LNCipedia gene ID: LINC01388
Location (hg19): chr9:101002-102941
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000427318; ENST00000427318.1; RP11-143M1.3-002; OTTHUMT00000055438.1; NONHSAT129894
Alternative gene names: ENSG00000227917; RP11-143M1.3; ENSG00000227917.1; OTTHUMG00000021018.1; TCONS_l2_00029888


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.3837 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01388:11 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4-2:1
3.1 lnc-FOXD4-2:1
4.0 lnc-FOXD4-2:1
4.1 LINC01388:11
5.0 LINC01388:11
5.1 LINC01388:11
5.2 LINC01388:11