Transcript: LINC01388:4

Basic information

LNCipedia transcript ID: LINC01388:4 
LNCipedia gene ID: LINC01388
Location (hg19): chr9:107715-114224
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5834 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231808.1|ENCT00000452248.1
Alternative gene names: TCONS_l2_00029888


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.9851 non-coding 
CPAT coding probability 99.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01388:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01388:4
5.0 LINC01388:4
5.1 LINC01388:4
5.2 LINC01388:4