Transcript: LINC01388:9

Basic information

LNCipedia transcript ID: LINC01388:9 
LNCipedia gene ID: LINC01388
Location (hg19): chr9:101014-109471
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT129895
Alternative gene names: TCONS_l2_00029888


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.8524 non-coding 
CPAT coding probability 21.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01388:9 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXD4-2:4
4.0 lnc-FOXD4-2:4
4.1 LINC01388:9
5.0 LINC01388:9
5.1 LINC01388:9
5.2 LINC01388:9