Transcript: LINC01394:35

Basic information

LNCipedia transcript ID: LINC01394:35 
HGNC Gene Symbol: LINC01394    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1394
Ensembl Gene ID: ENSG00000281809
Ensembl Transcript ID: ENST00000627866
Location (hg19): chr6:1321933-1324257
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627866.1
Alternative gene names: ENSG00000281809.1; LINC01394; AL499606.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -82.1195 non-coding 
CPAT coding probability 2.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01394:35 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GMDS-3:12
4.1 lnc-GMDS-3:12
5.0 lnc-GMDS-3:12
5.1 LINC01394:16
5.2 LINC01394:35