Transcript: LINC01396:1

Basic information

LNCipedia transcript ID: LINC01396:1 
HGNC Gene Symbol: LINC01396    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1396
Ensembl Gene ID: ENSG00000273396
Ensembl Transcript ID: ENST00000609099
RefSeq ID: NR_125765
Location (hg19): chr4:4846164-4852554
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000609099.1; NR_125765; NR_125765.1
Alternative gene names: ENSG00000273396.1; RP11-326I19.3; LINC01396;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.9156 non-coding 
CPAT coding probability 7.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01396:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX1-3:1
4.0 LINC01396:1
4.1 LINC01396:1
5.0 LINC01396:1
5.1 LINC01396:1
5.2 LINC01396:1