Transcript: LINC01405:13

Basic information

LNCipedia transcript ID: LINC01405:13 
LNCipedia gene ID: LINC01405
Location (hg19): chr12:111374389-111381499
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 709 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000185847.3|ENST00000548368.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.3353 non-coding 
CPAT coding probability 9.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01405:13 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01405:13
5.0 LINC01405:13
5.1 LINC01405:13
5.2 LINC01405:13