Transcript: LINC01405:2

Basic information

LNCipedia transcript ID: LINC01405:2 
LNCipedia gene ID: LINC01405
Location (hg19): chr12:111374390-111395919
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 872 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT030711
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.3353 non-coding 
CPAT coding probability 19.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01405:2 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC63-2:9
4.0 LINC01405:2
4.1 LINC01405:2
5.0 LINC01405:2
5.1 LINC01405:2
5.2 LINC01405:2