Transcript: LINC01411:6

Basic information

LNCipedia transcript ID: LINC01411:6 
LNCipedia gene ID: LINC01411
Location (hg19): chr5:173763498-173954048
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 844 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000510234.1; RP11-267A15.1-002; OTTHUMT00000371777.1; NONHSAT105239
Alternative gene names: ENSG00000249306.1; RP11-267A15.1; OTTHUMG00000163128.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.3516 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01411:6 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-4:3
4.0 LINC01411:6
4.1 LINC01411:6
5.0 LINC01411:6
5.1 LINC01411:6
5.2 LINC01411:6