Transcript: LINC01419:4

Basic information

LNCipedia transcript ID: LINC01419:4 
HGNC Gene Symbol: LINC01419    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1419
Ensembl Gene ID: ENSG00000253898
Ensembl Transcript ID: ENST00000522365
RefSeq ID: NR_122034
Location (hg19): chr8:84315993-84321135
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1521 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522365; ENST00000522365.1; RP11-51M18.1-001; OTTHUMT00000379379.1; NONHSAT127496; NR_122034.1
Alternative gene names: ENSG00000253898; RP11-51M18.1; ENSG00000253898.1; OTTHUMG00000164609.1; LINC01419; TCONS_00014497


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.1986 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.172413793
seqAAMSCNTHREDLQLHSRASETTNPPEGRNSEHI
orfFrame6.660819418

In stringent set: no

Locus conservation

Locus conservation?
LINC01419:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALYL-2:2
3.1 lnc-RALYL-2:1
4.0 LINC01419:4
4.1 LINC01419:4
5.0 LINC01419:4
5.1 LINC01419:4
5.2 LINC01419:4