Transcript: LINC01426:2

Basic information

LNCipedia transcript ID: LINC01426:2 
LNCipedia gene ID: LINC01426
RefSeq ID: NR_038886
Location (hg19): chr21:36118122-36120664
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 779 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT081889; NR_038886; NR_038886.1
Alternative gene names: ; LINC01426


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4801 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01426:2 no no no no

Available literature

  1. Morton (2014), Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens., Lung Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLIC6-2:4
4.0 LINC01426:2
4.1 LINC01426:2
5.0 LINC01426:2
5.1 LINC01426:2
5.2 LINC01426:2