Transcript: LINC01427:5

Basic information

LNCipedia transcript ID: LINC01427:5 
LNCipedia gene ID: LINC01427
Location (hg19): chr20:22255046-22263124
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4392 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027883; NONHSAT078969
Alternative gene names: XLOC_013679; linc-NKX2-2-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.5085 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01427:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-8:2
3.1 lnc-FOXA2-8:2
4.0 LINC01427:5
4.1 LINC01427:5
5.0 LINC01427:5
5.1 LINC01427:5
5.2 LINC01427:5