Transcript: LINC01427:6

Basic information

LNCipedia transcript ID: LINC01427:6 
HGNC Gene Symbol: LINC01427    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1427
Ensembl Gene ID: ENSG00000225321
Ensembl Transcript ID: ENST00000635258
Location (hg19): chr20:22243703-22263124
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4566 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635258.1
Alternative gene names: ENSG00000225321.2; LINC01427;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.5085 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01427:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01427:6
4.1 LINC01427:6
5.0 LINC01427:6
5.1 LINC01427:6
5.2 LINC01427:6