Transcript: LINC01436:1

Basic information

LNCipedia transcript ID: LINC01436:1 
LNCipedia gene ID: LINC01436
RefSeq ID: NR_110419
Location (hg19): chr21:37377618-37380593
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1523 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110419; NR_110419.1
Alternative gene names: AP000688.8; LINC01436


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.1814 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01436:1 no no no no

Available literature

  1. Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CBR1-3:2
4.0 LINC01436:1
4.1 LINC01436:1
5.0 LINC01436:1
5.1 LINC01436:1
5.2 LINC01436:1