Transcript: LINC01438:1

Basic information

LNCipedia transcript ID: LINC01438:1 
HGNC Gene Symbol: LINC01438    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1438
Ensembl Gene ID: ENSG00000249519
Ensembl Transcript ID: ENST00000512794
Location (hg19): chr4:111715559-111718500
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007593; ENST00000512794; ENST00000512794.1; RP11-777N19.1-001; OTTHUMT00000363852.1; NONHSAT097823
Alternative gene names: XLOC_003647; linc-C4orf32-3; ENSG00000249519; RP11-777N19.1; ENSG00000249519.1; OTTHUMG00000161115.1; LINC01438; TCONS_00007593


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.3008 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01438:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ENPEP-1:1
3.1 lnc-ENPEP-1:1
4.0 LINC01438:1
4.1 LINC01438:1
5.0 LINC01438:1
5.1 LINC01438:1
5.2 LINC01438:1