Transcript: LINC01440:10

Basic information

LNCipedia transcript ID: LINC01440:10 
LNCipedia gene ID: LINC01440
Location (hg19): chr20:54039603-54043328
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00027957; ENST00000450623; ENST00000450623.1; RP5-1010E17.1-001; OTTHUMT00000079781.2
Alternative gene names: XLOC_013573; linc-MC3R-4; ENSG00000235166; RP5-1010E17.1; ENSG00000235166.1; OTTHUMG00000032780.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.9562 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01440:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MC3R-4:2
3.1 lnc-DOK5-1:2
4.0 LINC01440:10
4.1 LINC01440:10
5.0 LINC01440:10
5.1 LINC01440:10
5.2 LINC01440:10