Transcript: LINC01473:13

Basic information

LNCipedia transcript ID: LINC01473:13 
LNCipedia gene ID: LINC01473
Location (hg19): chr2:186821314-186821790
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT075979
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.1025 non-coding 
CPAT coding probability 28.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01473:13 no no no no

Available literature

  1. Brueckner (2012), Genomic rearrangements at the FRA2H common fragile site frequently involve non-homologous recombination events across LTR and L1(LINE) repeats., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSWIM2-11:1
4.0 lnc-ZSWIM2-11:1
4.1 LINC01473:13
5.0 LINC01473:13
5.1 LINC01473:13
5.2 LINC01473:13