Transcript: LINC01478:2

Basic information

LNCipedia transcript ID: LINC01478:2 
LNCipedia gene ID: LINC01478
RefSeq ID: NR_110792
Location (hg19): chr18:41903400-42111662
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2069 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00026205; NONHSAT059087; NR_110792; NR_110792.1
Alternative gene names: XLOC_012831; linc-SYT4-5; ; LINC01478


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.0232 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01478:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT4-2:2
3.1 lnc-SYT4-2:2
4.0 LINC01478:2
4.1 LINC01478:2
5.0 LINC01478:2
5.1 LINC01478:2
5.2 LINC01478:2