Transcript: LINC01489:1

Basic information

LNCipedia transcript ID: LINC01489:1 
HGNC Gene Symbol: LINC01489    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1489
Ensembl Gene ID: ENSG00000255727
Ensembl Transcript ID: ENST00000542689
RefSeq ID: NR_120466
Location (hg19): chr12:15154767-15159617
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000542689; ENST00000542689.1; RP11-508P1.2-001; OTTHUMT00000400881.1; NONHSAT027108; NR_120466; NR_120466.1
Alternative gene names: ENSG00000255727; RP11-508P1.2; ENSG00000255727.1; OTTHUMG00000168744.1; LINC01489;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.8049 non-coding 
CPAT coding probability 60.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01489:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDE6H-1:1
3.1 lnc-PDE6H-1:1
4.0 LINC01489:1
4.1 LINC01489:1
5.0 LINC01489:1
5.1 LINC01489:1
5.2 LINC01489:1