Transcript: LINC01501:8

Basic information

LNCipedia transcript ID: LINC01501:8 
HGNC Gene Symbol: LINC01501    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1501
Ensembl Gene ID: ENSG00000229613
Ensembl Transcript ID: ENST00000427523
Location (hg19): chr9:93225806-93229227
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 409 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015844; ENST00000427523; ENST00000427523.1; RP11-555F9.2-001; OTTHUMT00000053013.1; NONHSAT133006
Alternative gene names: XLOC_007770; linc-SEMA4D-4; ENSG00000229613; RP11-555F9.2; ENSG00000229613.1; OTTHUMG00000020197.1; LINC01501;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.7727 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01501:8 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DIRAS2-1:5
3.1 lnc-DIRAS2-1:5
4.0 LINC01501:8
4.1 LINC01501:8
5.0 LINC01501:8
5.1 LINC01501:8
5.2 LINC01501:8