Transcript: LINC01507:3

Basic information

LNCipedia transcript ID: LINC01507:3 
LNCipedia gene ID: LINC01507
Ensembl Gene ID: ENSG00000280366
Ensembl Transcript ID: ENST00000622930
Location (hg19): chr9:82589938-82604979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622930.1
Alternative gene names: ENSG00000280366.1; RP11-327L9.1; XLOC_000303; AL161782.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.2315 non-coding 
CPAT coding probability 5.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01507:3 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01507:3
4.1 LINC01507:3
5.0 LINC01507:3
5.1 LINC01507:3
5.2 LINC01507:3