Transcript: LINC01507:6

Basic information

LNCipedia transcript ID: LINC01507:6 
LNCipedia gene ID: LINC01507
Location (hg19): chr9:82604785-82649802
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 975 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT132569; FPKM1_group_33279_transcript_1
Alternative gene names: XLOC_000303


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.1879 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01507:6 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLE4-2:5
4.0 LINC01507:6
4.1 LINC01507:6
5.0 LINC01507:6
5.1 LINC01507:6
5.2 LINC01507:6