Transcript: LINC01507:8

Basic information

LNCipedia transcript ID: LINC01507:8 
HGNC Gene Symbol: LINC01507    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1507
Ensembl Gene ID: ENSG00000230945
Ensembl Transcript ID: ENST00000417801
Location (hg19): chr9:82645494-82649470
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015698; ENST00000417801; ENST00000417801.1; RP11-394O9.1-001; OTTHUMT00000052799.1; NONHSAT132571
Alternative gene names: XLOC_007419; linc-FAM75D4-2; ENSG00000230945; RP11-394O9.1; ENSG00000230945.1; OTTHUMG00000020075.1; LINC01507; XLOC_000303


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.1879 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01507:8 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TLE4-1:2
3.1 lnc-TLE4-2:2
4.0 LINC01507:8
4.1 LINC01507:8
5.0 LINC01507:8
5.1 LINC01507:8
5.2 LINC01507:8