Transcript: LINC01509:1

Basic information

LNCipedia transcript ID: LINC01509:1 
LNCipedia gene ID: LINC01509
RefSeq ID: NR_121581
Location (hg19): chr9:110182565-110228866
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 960 bp
Exons: 8
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121581; NR_121581.1
Alternative gene names: ; LINC01509


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -102.8829 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01509:1 no no no no

Available literature

  1. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF4-1:3
4.0 LINC01509:1
4.1 LINC01509:1
5.0 LINC01509:1
5.1 LINC01509:1
5.2 LINC01509:1