Transcript: LINC01513:1

Basic information

LNCipedia transcript ID: LINC01513:1 
HGNC Gene Symbol: LINC01513    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1513
Ensembl Gene ID: ENSG00000246016
Ensembl Transcript ID: ENST00000416930
Location (hg19): chr5:10479483-10482421
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009352; ENST00000416930.2; RP11-1C1.7-001; OTTHUMT00000367041.1; NONHSAT100444
Alternative gene names: XLOC_004293; linc-ANKRD33B-2; ENSG00000246016.2; RP11-1C1.7; OTTHUMG00000162053.1; LINC01513; TCONS_00009352


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5362 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01513:1 no no no no

Available literature

  1. Ding (2017), Microarray expression profiling of long non-coding RNAs in epithelial ovarian cancer., Oncol Lett
  2. Xu (2014), Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROPN1L-1:1
3.1 lnc-ROPN1L-1:1
4.0 LINC01513:1
4.1 LINC01513:1
5.0 LINC01513:1
5.1 LINC01513:1
5.2 LINC01513:1