Transcript: LINC01527:1

Basic information

LNCipedia transcript ID: LINC01527:1 
HGNC Gene Symbol: LINC01527    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1527
Ensembl Gene ID: ENSG00000224308
Ensembl Transcript ID: ENST00000419578
Location (hg19): chr1:152902516-152921686
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1997 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000641; ENST00000419578.1; RP1-13P20.6-005; OTTHUMT00000034662.1; NONHSAT006498
Alternative gene names: XLOC_001030; linc-LCE1C-2; ENSG00000224308.1; RP1-13P20.6; OTTHUMG00000012449.1; LINC01527; lnc-SPRR2D-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.168 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01527:1 no no no no

Available literature

  1. Liu (2016), A potential biomarker for colorectal cancer: long non-coding RNA RP1-13P20.6., Neoplasma
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRR2D-1:1
3.1 lnc-SPRR2D-1:1
4.0 LINC01527:1
4.1 LINC01527:1
5.0 LINC01527:1
5.1 LINC01527:1
5.2 LINC01527:1