Transcript: LINC01537:5

Basic information

LNCipedia transcript ID: LINC01537:5 
LNCipedia gene ID: LINC01537
Location (hg19): chr11:72281689-72284273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2465 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227467.3|ENST00000450804.3
Alternative gene names: RP11-169D4.1-001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.4193 non-coding 
CPAT coding probability 10.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01537:5 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01537:5
5.0 LINC01537:5
5.1 LINC01537:5
5.2 LINC01537:5