Transcript: LINC01538:3

Basic information

LNCipedia transcript ID: LINC01538:3 
LNCipedia gene ID: LINC01538
Location (hg19): chr18:61880318-61927290
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2407 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_033983
Alternative gene names: TCONS_00026184


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.0885 non-coding 
CPAT coding probability 38.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01538:3 no no no no

Available literature

  1. Samir (2018), Competing endogenous RNA network crosstalk reveals novel molecular markers in colorectal cancer., J. Cell. Biochem.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERPINB3-2:2
4.0 LINC01538:3
4.1 LINC01538:3
5.0 LINC01538:3
5.1 LINC01538:3
5.2 LINC01538:3