Transcript: LINC01539:5

Basic information

LNCipedia transcript ID: LINC01539:5 
LNCipedia gene ID: LINC01539
RefSeq ID: NR_040025
Location (hg19): chr18:53750587-53804767
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2093 bp
Exons: 9
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00026210; NONHSAT059405; NR_040025; NR_040025.1
Alternative gene names: XLOC_012852; linc-TCF4-4; ; LINC01539


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.1648 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:5 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF4-5:4
3.1 lnc-TCF4-5:4
4.0 LINC01539:5
4.1 LINC01539:5
5.0 LINC01539:5
5.1 LINC01539:5
5.2 LINC01539:5