Transcript: LINC01541:2

Basic information

LNCipedia transcript ID: LINC01541:2 
HGNC Gene Symbol: LINC01541    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1541
Ensembl Gene ID: ENSG00000260676
Ensembl Transcript ID: ENST00000568095
Location (hg19): chr18:69187198-69246192
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3105 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568095.1; RP11-510D19.1-001; OTTHUMT00000431622.1; NONHSAT059792; ENST00000568095.5
Alternative gene names: ENSG00000260676.1; RP11-510D19.1; OTTHUMG00000176200.2; ENSG00000260676.5; LINC01541;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.5064 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01541:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CBLN2-5:1
4.0 LINC01541:2
4.1 LINC01541:2
5.0 LINC01541:2
5.1 LINC01541:2
5.2 LINC01541:2