Transcript: LINC01549:5

Basic information

LNCipedia transcript ID: LINC01549:5 
HGNC Gene Symbol: LINC01549    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1549
Ensembl Gene ID: ENSG00000232560
Ensembl Transcript ID: ENST00000613691
Location (hg19): chr21:18814099-18821226
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 219 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613691.1
Alternative gene names: ENSG00000232560.6; LINC01549;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -557.0568 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01549:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01549:5
4.1 LINC01549:5
5.0 LINC01549:5
5.1 LINC01549:5
5.2 LINC01549:5