Transcript: LINC01553:3

Basic information

LNCipedia transcript ID: LINC01553:3 
HGNC Gene Symbol: LINC01553    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1553
Ensembl Gene ID: ENSG00000235931
Ensembl Transcript ID: ENST00000430888
Location (hg19): chr10:61718043-61718429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 387 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430888.1
Alternative gene names: ENSG00000235931.2; LINC01553; AC023904.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -92.5657 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01553:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01553:3
4.1 LINC01553:3
5.0 LINC01553:3
5.1 LINC01553:3
5.2 LINC01553:3