Transcript: LINC01554:10

Basic information

LNCipedia transcript ID: LINC01554:10 
LNCipedia gene ID: LINC01554
Location (hg19): chr5:95197489-95199668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2147 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250362.1|MICT00000286280.1
Alternative gene names: FLJ38821; FIS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -73.2086 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01554:10 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01554:10
5.0 LINC01554:10
5.1 LINC01554:10
5.2 LINC01554:10