Transcript: LINC01558:2

Basic information

LNCipedia transcript ID: LINC01558:2 
LNCipedia gene ID: LINC01558
Location (hg19): chr6:168185221-168197539
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1648 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00011144
Alternative gene names: XLOC_005924; linc-TCP10-4; HGC6.2; dJ431P23.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.3237 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01558:2 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRMD1-4:2
3.1 lnc-FRMD1-4:2
4.0 LINC01558:2
4.1 LINC01558:2
5.0 LINC01558:2
5.1 LINC01558:2
5.2 LINC01558:2