Transcript: LINC01561:1

Basic information

LNCipedia transcript ID: LINC01561:1 
LNCipedia gene ID: LINC01561
RefSeq ID: NR_103717
Location (hg19): chr10:122357461-122359635
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2175 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103717; NR_103717.1
Alternative gene names: FLJ37402; Em:AC023282.2; LINC01561


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0077 non-coding 
CPAT coding probability 19.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01561:1 no no no no

Available literature

  1. Jiang (2018), Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer., Int. J. Biochem. Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf85-2:1
4.0 LINC01561:1
4.1 LINC01561:1
5.0 LINC01561:1
5.1 LINC01561:1
5.2 LINC01561:1