Transcript: LINC01563:2

Basic information

LNCipedia transcript ID: LINC01563:2 
HGNC Gene Symbol: LINC01563    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1563
Ensembl Gene ID: ENSG00000236819
Ensembl Transcript ID: ENST00000456235
Location (hg19): chr17:20978869-20993928
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 750 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025162; ENST00000456235; ENST00000456235.1; AC087393.1-001; OTTHUMT00000253268.1; NONHSAT052158
Alternative gene names: XLOC_012142; linc-DHRS7B-1; ENSG00000236819; AC087393.1; ENSG00000236819.1; OTTHUMG00000130762.1; LINC01563;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.6596 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01563:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHRS7B-2:1
3.1 lnc-DHRS7B-2:1
4.0 LINC01563:2
4.1 LINC01563:2
5.0 LINC01563:2
5.1 LINC01563:2
5.2 LINC01563:2