Transcript: LINC01569:3

Basic information

LNCipedia transcript ID: LINC01569:3 
HGNC Gene Symbol: LINC01569    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1569
Ensembl Gene ID: ENSG00000262468
Ensembl Transcript ID: ENST00000573042
RefSeq ID: NR_039999
Location (hg19): chr16:4295826-4303790
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2093 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500351; TCONS_00024262; ENST00000573042.1; RP11-95P2.1-001; OTTHUMT00000438090.1; NONHSAT148102; NR_039999; NR_039999.1
Alternative gene names: ENSG00000245388; XLOC_011867; linc-SRL; AC009171.1; ENSG00000262468.1; RP11-95P2.1; OTTHUMG00000177618.1; ENSG00000262468.5; LINC01569; TCONS_00024567


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2849 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01569:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFAP4-1:2
3.1 lnc-SRL-2:2
4.0 LINC01569:3
4.1 LINC01569:3
5.0 LINC01569:3
5.1 LINC01569:3
5.2 LINC01569:3