Transcript: LINC01571:5

Basic information

LNCipedia transcript ID: LINC01571:5 
HGNC Gene Symbol: LINC01571    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1571
Ensembl Gene ID: ENSG00000260057
Ensembl Transcript ID: ENST00000569993
RefSeq ID: NR_110916
Location (hg19): chr16:51796430-51806557
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000569993.1; RP11-7O14.1-001; OTTHUMT00000422615.1; NONHSAT142485; NR_110916; ENST00000569993.5; NR_110916.1
Alternative gene names: ENSG00000260057.1; RP11-7O14.1; OTTHUMG00000173251.1; ENSG00000260057.5; LINC01571; TCONS_00024399


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.1511 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01571:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-327F22.5.1-7:5
4.0 LINC01571:5
4.1 LINC01571:5
5.0 LINC01571:5
5.1 LINC01571:5
5.2 LINC01571:5