Transcript: LINC01574:4

Basic information

LNCipedia transcript ID: LINC01574:4 
LNCipedia gene ID: LINC01574
RefSeq ID: NR_108030
Location (hg19): chr5:176170206-176170922
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 610 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108030; NR_108030.1
Alternative gene names: HI-LNC12; TCONS_00009551; LINC01574


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.642 non-coding 
CPAT coding probability 7.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01574:4 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UNC5A-1:4
4.0 LINC01574:4
4.1 LINC01574:4
5.0 LINC01574:4
5.1 LINC01574:4
5.2 LINC01574:4