Transcript: LINC01574:5

Basic information

LNCipedia transcript ID: LINC01574:5 
HGNC Gene Symbol: LINC01574    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1574
Ensembl Gene ID: ENSG00000248859
Ensembl Transcript ID: ENST00000512115
Location (hg19): chr5:176170206-176170872
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512115.2
Alternative gene names: ENSG00000248859.2; RP11-375B1.3; LINC01574; HI-LNC12; TCONS_00009551


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.642 non-coding 
CPAT coding probability 7.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01574:5 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UNC5A-1:5
4.0 LINC01574:5
4.1 LINC01574:5
5.0 LINC01574:5
5.1 LINC01574:5
5.2 LINC01574:5