Transcript: LINC01580:2

Basic information

LNCipedia transcript ID: LINC01580:2 
HGNC Gene Symbol: LINC01580    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1580
Ensembl Gene ID: ENSG00000258785
Ensembl Transcript ID: ENST00000555255
RefSeq ID: NR_120323
Location (hg19): chr15:94443930-94527379
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000555255; ENST00000555255.1; CTD-2643K12.2-001; OTTHUMT00000415195.1; NONHSAT050147; NR_120323; NR_120323.1
Alternative gene names: ENSG00000258785; CTD-2643K12.2; ENSG00000258785.1; OTTHUMG00000171810.1; ENSG00000258785.5; LINC01580;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.9796 non-coding 
CPAT coding probability 7.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01580:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MCTP2-2:1
3.1 lnc-MCTP2-4:1
4.0 LINC01580:2
4.1 LINC01580:2
5.0 LINC01580:2
5.1 LINC01580:2
5.2 LINC01580:2