Transcript: LINC01589:4

Basic information

LNCipedia transcript ID: LINC01589:4 
HGNC Gene Symbol: LINC01589    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1589
Ensembl Gene ID: ENSG00000238120
Ensembl Transcript ID: ENST00000422971
Location (hg19): chr22:46000312-46001501
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029353; ENST00000422971.1; CTA-941F9.9-001; OTTHUMT00000322249.1; NONHSAT087236
Alternative gene names: XLOC_014399; linc-FBLN1-AS; ENSG00000238120.1; CTA-941F9.9; OTTHUMG00000151331.1; LINC01589; TCONS_00029353


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.8854 non-coding 
CPAT coding probability 4.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01589:4 no no no no

Available literature

  1. Wang (2015), Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMC1B-3:3
3.1 lnc-SMC1B-3:3
4.0 LINC01589:4
4.1 LINC01589:4
5.0 LINC01589:4
5.1 LINC01589:4
5.2 LINC01589:4