Transcript: LINC01590:2

Basic information

LNCipedia transcript ID: LINC01590:2 
LNCipedia gene ID: LINC01590
Location (hg19): chr6:88081311-88102519
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 542 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000448282; ENST00000448282.1; RP1-102H19.6-001; OTTHUMT00000041439.1; NONHSAT113900
Alternative gene names: ENSG00000226524; RP1-102H19.6; ENSG00000226524.1; OTTHUMG00000015172.1; dJ102H19.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.1789 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01590:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf164-1:1
3.1 lnc-C6orf164-1:1
4.0 LINC01590:2
4.1 LINC01590:2
5.0 LINC01590:2
5.1 LINC01590:2
5.2 LINC01590:2